Bioinformatics - SRA Download, QC, and Trimming
37:00
YouTubeAlex Soupir
Bioinformatics - SRA Download, QC, and Trimming
In this video I run through the project that these videos are based on, downloading raw fastq files, running quality control check, and trimming. Also mentioned is how to use parallel to do all of the files in one command rather than running a command for each. Conda packages used: fastqc, multiqc, sra-tools (fastq-dump), parallel, trimmomatic ...
16.3K viewsJun 24, 2020
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