Convert between CSV and FASTA formats for sequence files. CSV format expects columns: id, sequence (and optionally others) if id_col not in df.columns: raise ValueError(f"ID column '{id_col}' not ...
1. XQL-based BIOCs (is_xql=true) - Uses XQL queries 2. Indicator-based BIOCs (is_xql=false) - Uses investigation filters Usage: python csv_to_bioc.py --file biocs.csv --output biocs.json python csv_to ...
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